PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018053-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 289aa    MW: 31304 Da    PI: 9.2394
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018053-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.7e-1478122347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  WALNUT_00018053-RA  78 PWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 122
                         8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.631520IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129414.15973127IPR017930Myb domain
SMARTSM007172.8E-1075125IPR001005SANT/Myb domain
SuperFamilySSF466893.36E-1675127IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1676125IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-1177122IPR009057Homeodomain-like
CDDcd001671.45E-978123No hitNo description
PfamPF002494.7E-1178122IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSRTCSQCGN NGHNSRTCTD SGGGENGIML FGVRVTEGNS FRKSASMNNL SQYDQQPQDS  60
NAEAGYASDD VVHPSGVPWT EEEHRLFLLG LQKVGKGDWR GISRNFVKTR TPTQVASHAQ  120
KYFLRRTNQN RRRRRSSLFD ITADTFLGSS MDEDQVHQET APLPKPQLHL SHNHGGFPLS  180
SFPVALAPAV VPVPLAVENP LEKLSLGPNN HVRMSSKPIR PIPMLPVPPS SKMADLNLNQ  240
KTQADPSPLS LKLSIASSGE QSPPATHSSA FQAIPGNFSS SGDSIISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652808.11e-127PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B02e-48MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA5C6311e-127A5C631_VITVI; Putative uncharacterized protein
STRINGVIT_01s0026g01050.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.24e-75MYB_related family protein